The history of paleontology has been an ongoing effort to understand the history of life on Earth by understanding the fossil record left behind by living organisms. Inevitably it has been closely tied to geology and the effort to understand the history of the Earth itself. In the 17th and 18th centuries there was progress made in understanding the nature of fossils and the at the end of the 18th century the work of Georges Cuvier lead to the emergence of paleontology, in association with comparative anatomy, as a scientific discipline. The expanding knowledge of the fossil record also played an increasing role in the development of geology, particularly stratigraphy. The first half of the 19th century saw a rapid increase in knowledge about the past history of life on Earth and the progress towards definition of the geologic time scale. After Charles Darwin published the Origin of Species in 1859, much of the focus of paleontology shifted to understanding evolutionary paths, including human evolution, and evolutionary theory. The last half of the 20th century saw a renewal of interest in mass extinctions and their role in history of life on Earth.
Prior to the 17th century
As early as the 6th century BC Xenophanes of Colophon recognized that some fossil shells were remains of shellfish and indicated that what was now dry land was once under the sea. It is also well known that in one of his unpublished notebooks Leonardo da Vinci (1452-1519) concluded that some fossil sea shells were the remains of shellfish. However in both cases it is clear that the fossils were relatively complete remains of mollusk species that very closely resembled living species and thus were relatively easy to classify. 
In the 16th century there was still little recognition of the organic origin of the fossil remains of living organisms. As the etymology of the word fossil, which comes from the Latin for things having been dug up, indicates, the term was applied to wide variety of stone and stone like objects without regard to whether they might have an organic origin. 16th century writers like Conrad Gesner and Georg Agricola were more interested in classifying such objects by their properties, both physical and mystical, than they were in their origins.  Both the Aristotelian and Neoplatonic schools of philosophy provided intellectual frameworks where it was reasonable to believe that stony objects might grow within the earth to resemble living things. Neoplatonic philosophy maintained that there could be affinities between living and non living objects that could cause one to resemble the other. The Aristotelian school maintained that it was possible for the seeds of living organisms to enter the ground and generate objects that resembled those organinsims. 
The 17th century, often referred to as the Age of Reason, saw fundamental changes in natural philosophy that were reflected in the analysis of fossils. In 1665 Robert Hooke published Micrographia, an illustrated collection of his observations with a microscope. One of these observations was entitled Of Petrify'd wood, and other Petrify'd bodies, which included a comparison between petrified wood and ordinary wood. He concluded that petrified wood was ordinary wood that had been soaked with water impregnated with stony and earthy particles. He then went on to suggest that several kinds of fossil sea shells were formed from ordinary shells by a similar process. He argued against the prevalent view that such objects were Stones form'd by some extraordinary Plastick virtue latent in the Earth itself. 
In 1667 Nicholas Steno wrote a paper on a large shark head he had dissected the year before, in which he compared the teeth of the shark with the common fossil objects known as tongue stones. He concluded that the fossils must have been shark teeth. This caused Steno to take an interest in the question of fossils and to address some of the objections that were raised against their organic origin. As a result he did some geological research and in 1669 published Forerunner to a Dissertation on a solid naturally enclosed in a solid. In that work Steno drew a clear distinction between objects such as rock crystals that really were formed within rocks and objects such as fossil shells and shark teeth that were formed outside of the rocks they were found in. Steno realized that certain kinds of rock had been formed by the successive deposition of horizontal layers of sediment and that fossils were the remains of living organisms that had become buried in that sediment. Steno who, like almost all 17th century natural philosophers, believed that the earth was only a few thousand years old, resorted to the Biblical flood as a possible explanation for fossils of marine organism that were found very far from the sea. 
Despite the considerable influence of Forerunner, naturalists such as Martin Lister (1638-1712) and John Ray (1627-1705) continued to question the organic origin of some fossils. They were particularly concerned about objects such as fossil Ammonites, which Hooke had claimed were organic in origin, which did not closely resemble any known living species. This raised the possibility of extinction, which they found difficult to accept for philosophical and theological reasons. 
In his 1778 work Epochs of Nature Georges Buffon referred to fossils, in particular the discovery of what he thought of as fossils of tropical species such as elephants and rhinoceros in northern Europe, as evidence for the theory that the earth had started out much warmer than it currently was and had been gradually cooling.
In 1796 Georges Cuvier presented a paper on living and fossil elephants, in which he used comparative anatomy to analyze skeletal remains of Indian and African elephants, mammoth fossils, and fossil remains of an animal recently found in North America that he would later name mastodon. He established for the first time that Indian and African elephants were different species, and even more importantly that mammoths had been a different species from either and therefore must be extinct. He further concluded that the mastodon must be another extinct species that was even more different from Indian or African elephants than mammoths had been. Cuvier’s ground breaking work in paleontology and comparative anatomy, lead to the wide spread acceptance of the reality of extinction.  It also lead Cuvier to advocate the geological theory of catastrophism to explain the succession of living things revealed by the fossil record. Cuvier also pointed out that since mammoths and wooly rhinoceros were not the same species as the elephants and rhinoceros currently living in the tropics, their fossils could not be used as evidence for a cooling earth. Cuvier made another powerful demonstration of the power of comparative anatomy in paleontologhy when he presented a second paper in 1796 on a large fossil skeleton from Paraguay, which he named megatherium and identified as a giant sloth by comparing its skull to those of two living species of tree sloth.
William Smith, a surveyor and mining engineer, made extensive use of fossils and the principle of faunal succession to make sense of rock strata as he worked on the first geological map of England during the late 1790's and early 1800's. Cuvier and Alexandre Brongniart, an instructor at the Paris school of mine engineering, used similar methods during the same period in an influential study of the geology of the region arround Paris. These were pioneering applications of stratigraphy.
First half of the 19th century
The age of reptiles
Cuvier identified a fossil found in Maastricht as a giant marine reptile that he named Mosasaurus in 1808. He also identified, from a drawing, another fossil found in Bavaria as a flying reptile and named it pterodactyl and speculated that an age of reptiles had preceded the first mammals.  Mary Anning, a professional fossil collector since age 11, collected the fossils of a number of marine reptiles from the Jurassic marine strata at Lyme Regis. These included, in 1811, the first ichthyosaur skeleton to be recognized as such, and the first plesiosaur in 1821. Many of her discoveries would be described scientifically by the geologists William Conybeare, Henry De la Beche and William Buckland.  In 1824 Buckland found, in some Jurassic deposits from Stonesfield, and described the lower jaw of a giant carnivorous land dwelling reptile he called megalosaurus. That same year Gideon Mantell realized that some large teeth he had found in 1821, in Cretaceous rocks from Tilgate, belonged to a giant herbivorous land dwelling reptile he called iguanodon, because the teeth resembled those of an iguana. The growing evidence that an age of giant reptiles had preceded the age of mammals caused great excitement in scientific circles.  In 1842 the anatomist Richard Owen would assign both megalosaurus and iguanodon to a new order of reptiles he called dinosauria.
Uniformitarianism and the fossil record
Partly in response to what he saw as unsound and unscientific speculations by William Buckland and other practitioners of flood geology, Charles Lyell advocated the geological theory of uniformitarianism. Lyell was largely successful in convincing geologists of the idea that the geological features of the earth were largely due to the action of the same geologic forces that could be observed in the present day acting over an extended period of time. However, he was much less successful in converting people to his view of the fossil record, which he claimed showed no true progression. 
Geological time scale and the history of life
Geologists such as Adam Sedgwick, discoverer of the Devonian, and the Cambrian and Roderick Murchison, discoverer of the Silurian, and the Permian continued, despite some contentious disputes, to describe new geological epochs making great advances in stratigraphy. By 1840 much of the geologic timescale had taken shape. All three of the periods of the Mesozoic era and all the periods of the Paleozoic era except the Ordovician had been defined.  Although, it remained a relative time scale with no method of assigning any of the periods absolute dates. It was understood that not only had there been an age of reptiles preceding the age of mammals, but there had a time (during the Silurian) when life had been restricted to the sea, and a time when invertebrates had been the dominant form of animal life.
2nd half of the 19th century
Charles Darwin's publication of the Origin of Species in 1859 and the resulting scientific debate lead to an effort to look for transitional fossils and other evidence of evolution in the fossil record. There were two areas where early success attracted considerable attention, the transition between reptiles and birds, and the evolution of the modern single toed horse.  In 1861 the first specimen of Archaeopteryx, an animal with both teeth and feathers and a mix of other reptilian and avian features, was discovered in a limestone quarry in Bavaria and another would be found in 1881. Other primitive toothed birds were found by Othniel Marsh in Kansas in 1872. Marsh also discovered fossils of several primitive horses in the Western United States that helped trace the evolution of the horse from the small 5 toed Hyracotherium of the Eocene to the much larger single toed modern horses of the genus Equus. Thomas Huxley would make extensive use of both the horse and bird fossils in his advocacy for evolution.
There was also great interest in human evolution. Neanderthal fossils were discovered in 1856, but at the time it was not clear that they represented a different species from modern humans. Eugene Dubois created a sensation with his discovery of Java Man, the first fossil evidence of a species that seemed clearly intermediate between humans and apes, in 1891.
Developments in North America
In the 2nd half of the 19th century saw a rapid expansion of paleontology in North America. In 1858 Joseph Leidy described a hadrosaur skeleton, which was the first dinosaur to be described in North America. However, it was the massive westward expansion of railroads, military bases, and settlements into Kansas and other parts of the Western United States following the American Civil War that really fueled the expansion of fossil collection.  The result was an increased understanding of the natural history of north America, including the discovery of the Western Interior Sea that had covered Kansas and much of the rest of the Midwestern United States during parts of the Cretaceous, the discovery several important fossils of primitive birds and horses, and the discovery of a number of new dinosaur species including Allosaurus, Stegosaurus, and Triceratops. Much of this activity was part of a fierce personal and professional rivalry between 2 men, Othniel Marsh, and Edward Cope, which has become known as the Bone Wars.
Some developments in the 20th century
Developments in Geology
Two 20th century developments in geology had a big effect on paleontology. The first was the development of radiometric dating which allowed absolute dates to be assigned to the geologic timescale. The 2nd was the theory of plate tectonics, which helped make sense of the geographical distribution of ancient life.
The 20th century saw a major renewal of interest in mass extinction events and their effect on the course of the history of life. This was particularly true after 1980 when Luis and Walter Alvarez put forward the Alvarez hypothesis claiming that an impact event caused the Cretaceous-Tertiary extinction, which killed off the dinosaurs along with many other living things.
Evolutionary paths and theory
Throughout the 20th century new fossil finds continued to contribute to understanding the paths taken by evolution. Examples include major taxonomic transitions such as finds in Greenland, starting in the 1930’s (with more major finds in the 1980’s), of fossils illustrating the evolution of tetrapods from fish, and finds in China during the 1990s that shed light on the dinosaur-bird connection. Other events that have attracted considerable attention have included a series of finds in Pakistan that have shed light on whale evolution, and most famously of all a series of finds throughout the 20th century in Africa (starting with Taung child in 1924) and elsewhere have helped illuminate the course of human evolution. Increasingly at the end of the century the results of paleontology and molecular biology were being correlated to reveal phylogenic trees. The results of paleontology have also contributed to other areas of evolutionary theory such as the theory of punctuated equilibrium.
- ↑ Rudwick The Meanging of Fossils pp 39
- ↑ Rudwick pp 23-33
- ↑ Rudwick pp 33-36
- ↑ Hooke Micrographia observation XVII
- ↑ Rudwick pp 72-73
- ↑ Rudwick pp 61-65
- ↑ McGowan the dragon seekers pp 3-4
- ↑ Rudwick Georges Cuvier, Fossil Bones and Geological Catastrophes pp 158
- ↑ McGowan pp 11-27
- ↑ McGowan pp 70-87
- ↑ McGowan pp 100-103
- ↑ Rudwick The Meaning of Fossilss pp 213
- ↑ Larson Evolution pp 139
- ↑ Everhart Oceans of Kansas pp 17
- Rudwick, Martin J.S. The Meaning of Fossils. The University of Chicago Press: Chicago 1972. ISBN 0-226-73103-0
- McGowan, Christopher The Dragon Seekers. Persus Publishing: Cambridge MA 2001. ISBN 0-7382-0282-7
- Rudwick, Martin J.S. Georges Cuvier, Fossil Bones, and Geological Catastrophes (The University of Chicago Press, 1997)ISBN 0-226-73106-5
- Robert Hooke Micrographia The Royal Society 1665
- Larson, Edward J. Evolution: The Remarkable History of a Scientific Theory. The Modern Library: New York, 2004. ISBN 0-679-64288-9
- Michael J. Everhart Oceans of Kansas: A Natural History of the Western Interior Sea. Indiana University Press: Bloomington, IN, 2005. ISBN 0-253-34547-2